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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the … . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations … Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts … it as a sustainable resource for making high-value bioproducts. As a step toward the long-term goal, researchers are … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was to bring together a “Viral … for the event photos. Keynote Speakers Katrine Whiteson , UC Irvine Chase Morgan , UC San Diego Britt Koskella , UC …
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Sequencing Technologies
… molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing … They apply Lean Six Sigma practices to process optimization and development approaches, testing various platforms to …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Kjiersten Fagnan
… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral … Microbiome Data Collaborative where she leads infrastructure and user-centered design efforts. … PhD Applied … enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. Pau and …
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