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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … genome annotations. For that undertaking, new transcriptome datasets are generated through Community Science Program …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … sequence and then analyze the genomes and multi-omics datasets for algae that can be used for large-scale … simulated summer in Arizona. Scenedesmus  sp. NREL 46B-D3, which thrives both in saltwater and wastewater, was …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next generation of flowering vegetation. In …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can browse the … and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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JGI on the 2021 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, reported on over the last year: Jeremy Schmutz was part of a long-term multi-institutional research team that …
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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced … career stages. The election period concluded on December 23, 2021. …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus … sinensis genome … CABBI Sequences Miscanthus Genome … Datasets … From our partners …
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Tanja Woyke Elected to American Academy of Microbiology
Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … and combining the information with previously published datasets. The work was  recently published in the journal  … type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 …
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