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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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Mieux connaître les virus présents sur Terre grâce aux métagénomes
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Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
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JGI Early Career Researchers Featured in mSystems Special Issue
… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better …
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Cataloging the Microbes that Manage the Health of River Systems
… Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare … was also generated. The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, … this because we have the resources as a user facility. The Metagenome Program team provided guidance and encouragement … researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to …
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Simon Roux
… JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS … al., 2020. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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