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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training … plant root exudates on the plant microbiome. This year, however, there was a new aspect to the project - they also worked with Sharon Greenblum from the User Support …
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Viruses Reprogram Cells into Different Virocells
… State University and the University of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … for User Science (FICUS) initiative through an award to MBD and MBS (#2582) and used resources at the DOE Joint …
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Gene Expression: From On-Off Switch to Dial
… Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to … used a library-based approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces … were previously missed in knock-out screens. These results show that this singular library synthesized by JGI was …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers … emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology …
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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A Collaboration to Improve Plant Genome Annotations Across Species
… 56 percent of plant genes are poorly characterized, meaning they have no known function. This is due to the overreliance … experimentally derived biological roles to genes. Sarah:  How many plants did you all look at? Avinash: We started off … the initial planning phase, there were about 10 groups that came together to standardize the experimental protocols. …
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Learning to Look
… learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … the cell membrane without lysing the bacterial host. They can also influence their host’s growth and … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a …
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Corals in Hot Water Get Help From Their Microbes
… As waters warm due to climate change, corals are in mortal peril. But corals comprise multiple organisms: a coral host, a photosynthetic microalgae, and a little-characterized … microbiome. When warm waters stress corals, it might be their microbes, including their photosynthetic partner, …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect … of different species. This can provide insights into how they orchestrate sets of genes to execute similar functions. … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … Advancing the bioeconomy will provide a wide range of benefits, but it also requires a deep understanding of …
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Programs & Platform Leads
… a leadership role in providing genome science capabilities to support BER's mission of achieving a predictive understanding of … for energy and infrastructure security. In complement to the Community Science Program, JGI researchers drive …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down … downstream, which is how the EPA, it’s one of the indices they use for stream health, they look at how many …
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