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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … approach. The Impact Altiarchaea are abundant and dominant populations in oxygen-poor environments without oxygen deep …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … community resource for comparative analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated context. IMG/M provides …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … makeup and identifying viruses interacting with these populations. Development of this protocol was enabled by the …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate … Microbiology . Their study focuses on the discovery of new populations within the Korarchaeota, one of which contains …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and …   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. “Because plants …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. Originally from northern California and one of the first students to participate in the DOE Joint Genome … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … Malak Tfaily, University of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to …
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