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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic …
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Open Frameworks Training the Next Generation of Scientists
… involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for field and … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the …
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Virus Discoveries that Keep Getting Bigger
… Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … culture-independent approaches to gain insight into the  genomes of giant viruses. In a new review, researchers from … on host range, morphological structures, and infection strategies. More recently, employing cultivation-independent …
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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … production perspective. By using genomic database alignment tools, researchers searched for TPS genes in C. citriodora . …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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