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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly …
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A call for standardized classification of metagenome projects
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … reactions, increase throughput, and enable processing of samples that would not be possible with traditional …
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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily … U.S. Department of Energy Joint Genome Institute (https:// …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better …
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Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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