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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … on large-scale genomic science projects relevant to the DOE’s Office of Biological and Environmental Research (BER) …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … classification framework that combines and builds on two standard techniques for identifying viruses and plasmids. …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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Strain Engineering
The focus of this group, in recent years, has been to bring … generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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JGI Workshop at 2025 Aquatic Sciences Meeting
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 48″ wide or less to ensure 2 posters fitting on the boards. JGI posters are typically printed in the ARCH E size which …
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