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The parallelism motifs of genomic data analysis
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint … The UEC represents the JGI user community and is responsible for providing input and advice on JGI … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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Nikos Kyrpides
… Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for …
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
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Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
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Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw
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High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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