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Genome sequence of the palaeopolyploid soybean
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … level, how does  Y. lipolytica work? The project was a multi-institutional effort led by then-graduate student Cory …
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Eelgrass Proves to Be Much Younger Than We Thought
The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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Annotation of metagenome short reads using proxygenes
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AmiGO: online access to ontology and annotation data
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MAGI: A Method for Metabolite Annotation and Gene Integration
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Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… more than two copies, a condition known as polyploidy. The multiple copies arise from past genome duplication, which … “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … metabolomics with genomic data (MAGI) for functional annotation and identifying unknown compounds (Pactolus). … … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… on Olpidium was from agricultural research. Several species of Olpidium are obligate endoparasites of some … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and Sekimoto …
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