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JGI@25: From Life at the Extremes to Editing Genomes
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Decoding Yellowstone’s Microbial Mats
National Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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Fungus Fuels Tree Growth
… its influence on the plant, a team of scientists studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black cottonwood, or poplar, ( Populus trichocarpa ) is the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The JGI is uniquely positioned to enable this kind … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … a series of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy … decomposition by the black morel, as well as the gene-expression programs encoding the biochemical processes … and cellulose were rapidly degraded by a set of significantly upregulated glycoside hydrolases, while triglycerides …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first glance, the … and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior …
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought … more easily convert plants into carbon-neutral biofuels . What’s more, many natural products have potential to be used … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural …
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Alabama A&M Interns Access An Abundance of Knowledge
… of root exudates, which overall influences the health and composition of the root microbiome and rhizosphere. Ti’Yanna … with tools as well as laboratory machines in hopes of transferring these skills to a DMD to a PhD program. … so many scientists here that are willing to tell you what they’re working on, and it helps you become more …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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