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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … ecologist with interests in understanding which processes change biodiversity, and how these changes affect … and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New Investigator proposal. As …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … helpful metabolism: who’s responsible for what biochemical processes? Now, an international team of researchers has …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can affect a …
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Testing the kinetic tradeoff between bicarbonate versus phosphoenolpyruvate affinity and glucose-6 phosphate response of phosphoenolpyruvate carboxylase from two C4 grasses
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … work is a contribution of the Simons Collaboration on Ocean Processes and Ecology and the Daniel K. Inouye Center for …
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JGI Announces 2025 New Investigator Portfolio
Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel … of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of …
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