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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric called …
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De novo Nanopore read quality improvement using deep learning
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community
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Discovery of enzymes for toluene synthesis from anoxic microbial communities
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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10 From JGI on the 2019 Highly Cited Researchers List
Woyke , Biology & Biochemistry category Some highlights from projects each of these researchers were involved in … last year: Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and understand. A team of …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects … include cutting-edge research into microbial communities — from freshwater estuaries reshaped by dam removal to … bringing together diverse expertise to address complex scientific questions.”  Of these 18 scientists, …
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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the … The mission of the JGI is to provide the global research community with access to the most advanced integrative …
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Rex Malmstrom
… he developed a high throughput approach for isolating individual bacterial cells and amplifying their genetic … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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