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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ …
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … for habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … a team of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … of microbial ecosystems, INRA, France; A Knowledge-Based Bioinformatics Framework for Microbial Pathway …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … of the polyploid reference line is simply not true based on previous pan-genome studies. Thus, we must compare …
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Genome-informed Bradyrhizobium taxonomy: where to from here?
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Four principles to establish a universal virus taxonomy
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