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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … “This provided us with genetic evidence to tie together the evolutionary history of the different types of …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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ChIP-Seq identification of weakly conserved heart enhancers
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … that photosynthesizers share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes …
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JGI Workshop at SIMB NP Meeting
Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious … often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of …
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … which they have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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