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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … permafrost from the warming regional temperatures. For this reason, the U.S. Department of Energy is overseeing … David Weston of Oak Ridge National Laboratory make the case for  sphagnum as “an unparalleled model system for …
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JGI Portals
… discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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DAP-seq Drives Robust Mapping of Gene Regulation
… advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … TFs and fragmented genomic DNA, eliminating the need for living cells. This allowed researchers to map regulatory … upon , allowing the platform to enable discoveries in plant biology and beyond at an unprecedented scale.  “All of the …
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Mapping the Earth’s Hidden Fungal Kingdom
… in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … A sweeping analysis published in Nature Reviews Microbiology of nearly 2,000 of these genomes reveals just how … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal …
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Webinar: MycoCosm Tutorial
… 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … While are still working on finalizing the tree and related publication the tree is still in development and not … (2018) Fungal Genome Annotation. In Methods in molecular biology 1775:171-184. Furthermore, Annotration SOP with …
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Uncovering Novel Genomes from Earth’s Microbiomes
… comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of … address some of the most pressing challenges of our time. For more information, please visit  …
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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … more productive cacao plants and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  … systemic orthology to enable use for both cacao functional biology and breeding.     …
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JGI User Executive Committee Expands
… Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … that are not easy to break down, as well as developing synthetic biology tools that can help produce value-added products …
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Picking Up Threads of Cotton Genomics
… , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton biology and lead to higher yield and improved fiber while …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of metallic protein that no one’s ever had a structure of before,” said Crysten Blaby-Haas, a research scientist at the … University in St. Louis and the University of California at Berkeley, as well as other DOE user facilities — …
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