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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … saprotrophs in the forest. White rot can break down the cellulose, hemicellulose, and lignin in plant cell walls, while brown rot … This research was also supported by the Laboratory of Excellence ARBRE (ANR-11-LABX-0002-01), the Region Lorraine, …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… from refining lab protocols at the bench to applying artificial intelligence to aspects of research questions … has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for field and … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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A Single Nucleotide Change in the polC DNA Polymerase III in Clostridium thermocellum Is Sufficient To Create a Hypermutator Phenotype
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are made up of a core enzyme … sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the …
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Learning to Look
… case, the machine “learned” to identify a certain type of bacterial viruses or phages called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection … are stealth agents that can enter and exit through the cell membrane without lysing the bacterial host. They can …
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Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
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Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems
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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
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