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Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … This work was supported by the U.S. Department of Energy, Office of …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an … Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI …
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
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CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria
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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria
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Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria
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