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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
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Genomes of multicellular algal sisters to land plants illuminate signaling network evolution
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, … likely to work well for metabolomics.  Q:  What tool or method is being used to integrate the metabolomics and …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … that showcase our collaborations and capabilities to enable great science that will help solve energy and … lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, inviting the …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint … mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & … the user to analyze these data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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Rice SNP-seek database update: new SNPs, indels, and queries
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Genomes OnLine database (GOLD) v.7: updates and new features
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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
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