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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal …
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Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to … Earth’s microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. The National …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. The work conducted by the National Microbiome …
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … UC Merced graduate students who participated in the Summer 2015 research experience at the JGI as part of an education … defends her dissertation in May. Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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