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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … a new pipeline for identifying viruses across many thousands of genomes and metagenomes, called geNomad (watch …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to … and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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