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Metabolomic Patterns of Septoria Canker Resistant and Susceptible Populus trichocarpa Genotypes 24 Hours Postinoculation.
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, along with … seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and stark the biogeographic boundary is between them. The data is somewhat beautiful in that regard,” said Andy Allen, …
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All Events
… is represented at conferences year round; find out where our researchers will be presenting next. Learn about …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the human language—are well positioned to help enhance our understanding of life’s genomic code, advancing DOE … problems,” Wang said. “We are also seeking to work with biotechnology companies including the bioeconomy space, trying …
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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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A More Intuitive Phytozome Interface
… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on … Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a modern and …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they … with the UC Merced students is a fantastic component of our work,” said Nigel Mouncey, JGI Director. “This year is …
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Picking Up Threads of Cotton Genomics
… underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new cotton work, …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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