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Effects of Polar Light Cycle on Microbial Food Web
… dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows … (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace …
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Len Pennacchio
… contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as … User science. … Complete Publications Genomic Technologies Program Defining the vast landscape of gene regulatory … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. … from several DOE-mission relevant proposals through JGI’s  Community Science Program . Proposals from researchers at … available but also complementary single-cell sorting and sequencing of viruses together with their unicellular …
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JGI Scientists Pen Genome Watch Articles
… and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … As such, JGI is involved in a broad variety of genomics projects that relate to energy and the environment.” she … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Fishing for Novel Cellulose Degraders
When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla
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Reference genome sequence of the model plant Setaria
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , … which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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Peatland microbial community responses to plant functional group and drought are depth‐dependent
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JGI announces 2024 Functional Genomics awardees
… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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