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Plant–microbiome interactions: from community assembly to plant health
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John Vogel
… joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular … driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked … Just as the common gardens have flourished, so has the community of switchgrass researchers grown. After almost two …
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … Center in Hungary. His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this collaboration, in 2017, they published … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Effects of Polar Light Cycle on Microbial Food Web
… dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows … (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… into a written report that is published in a scientific journal is the ultimate achievement. To get to this point … her summer internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev … now in her final year of PhD research at UC Merced. She plans to continue expanding her understanding of mathematics …
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Fishing for Novel Cellulose Degraders
When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … metagenomics to sample the entirety of a microbial community out in its natural environment, scientists have … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying …
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla
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Reference genome sequence of the model plant Setaria
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