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JGI Announces 2025 New Investigator Portfolio
… a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will investigate a diverse array … plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals are accepted …
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Accelerating Metagenomics Discoveries with Deep Learning
… gathered from whole samples rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… seen in later plant lineages. The team found that some of the adaptation strategies used by liverwort are also … has been used as a model for evolutionary studies. Its place among early-diverging plant lineages makes it … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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Learning to Look
… to miss them; maybe it’s due to the way we currently isolate and extract viruses,” said the study’s lead author … also learned how an inovirus’ strategy of integrating itself within a host can lead to beneficial or antagonistic … work also used resources of the  National Energy Research Scientific Computing Center , another DOE Office of Science …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… anaerobic fungi, as well as a recent discovery that turns scientific presumption on its head and opens up a new avenue to explore for efficient …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in the environmental samples without needing to isolate individual organisms, using various methods for … genomics community can now explore metabolism using KBase’s easy path from genomes or MAGs to modeling that may not have … work also used resources of the  National Energy Research Scientific Computing Center (NERSC) , another DOE Office of …
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How Filamentous Fungi Sense Food
… biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to produce enzymes, … Laboratory under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science …
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Examples: Successful LOIs & Submissions
… … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of … communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… features of this giant filamentous bacterium, along with its life cycle. For most bacteria, their DNA floats freely … was discovered by Olivier Gros, a marine biology professor at the Université des Antilles in Guadeloupe, in 2009. … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome sequences and the tools to compare … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Strain Engineering
… project types, in which DNA-based molecules can be chromosomally integrated into a taxonomically diverse suite of …
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Zhong Wang
… data analyses and software to enable “grand-scale” scientific projects. These solutions include large-scale … in the coming years the Wang group will continue its effort to explore new genome and computational … metagenome binning software … Education … Selected Publications … Software …
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