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Understanding Wildfire Recovery, Starting in Soil
… a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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Enlarging Windows into Understanding Gene Functions
… workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … bacteria instead go through a boom and bust cycle aligned with light availability. A long-running time-series study … difference offers new insight into the primary producers fueling our planet’s biogeochemical cycles. Water samples …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … focused on a relatively well-understood model system, so future directions will also include targeting biofuel … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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