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JGI@25: Solving the Mystery of the Missing Oil
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Expanding Virophage Diversity
… 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … them without previously known representatives). Of these, 89 contigs were considered to be complete genomes, and their …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut Creek, Calif.  Click here and scroll …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … for instance, he visualized entire filaments up to 9.66 mm long and confirmed that they were indeed giant single …
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Uncovering Novel Genomes from Earth’s Microbiomes
… this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel … viruses in  IMG/VR (Virus) and the GEM catalog, associating 81,000 viruses – 70% of which had not already been …
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Pinning Down a Piece of Photosynthesis
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … include six more species, so in total, we are looking at 18 different species, which included over 2000 RNA Seq …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on … it’s been prioritized in breeding efforts, and also because 8X switchgrass is generally thought to harbor less genetic … in 4X switchgrass, we were surprised by the number of 8X individuals that had been collected from field work. When …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell Drive, which was dedicated in February 2008. … Deputy post by  Nick Everson , the person Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick jumped …
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Evolution of a Fungal Gene Expression Regulator
… life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering … cytosine clusters (MCCs – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play …
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Tracking the Origins of Methane-Producing Microbes
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