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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… usually visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. To put it into context, … at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove systems, and he …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … this work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department of Energy …
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Pinning Down a Piece of Photosynthesis
… list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is an …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) … resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint … Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has been one constant for the Joint … to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to …
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Evolution of a Fungal Gene Expression Regulator
… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or … DNA base is a methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, … the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated with … heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded …
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Training the Next Generation of Talent
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