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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … production, and the crop’s annual economic impact of $500 billion worldwide underscores its value and importance … States, cotton production centers around two varieties: 95 percent of what is grown is known as Upland cotton ( …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … the southern California and Mexican coastlines. Roughly 100,000 years later, that Japanese eelgrass crossed the … from the China Scholarship Council to L.Y. (number 201704910807), by a fellowship to M.K. in the Helmholtz …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of Energy & Environment Meeting: “What …
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Expanding Virophage Diversity
… the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more … the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a … discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… usually visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. To put it into … Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … at carbon storage, you’ll find that they contribute 10-15% of the carbon stored in coastal sediments,” said Woyke, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental …
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Pinning Down a Piece of Photosynthesis
… and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint … Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has been one constant for the Joint … 2008. Ray won the  Director’s Award for Operations in 2017 in recognition of his tireless efforts to ensure the …
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