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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of …
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Expanding Virophage Diversity
… sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a …
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JGI Hosts GPU Hackathon in May
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… usually visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. To put it into … at carbon storage, you’ll find that they contribute 10-15% of the carbon stored in coastal sediments,” said Woyke, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome … which had not already been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers …
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Pinning Down a Piece of Photosynthesis
… list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … biological information. As I’ve said earlier, 16 to 56 percent of plant genes are poorly characterized. So the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint … Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … at 2800 Mitchell Drive, which was dedicated in February 2008. Ray won the  Director’s Award for Operations in 2017 in …
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Evolution of a Fungal Gene Expression Regulator
… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or … DNA base is a methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, … US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Tracking the Origins of Methane-Producing Microbes
Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the …
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