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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that program oak trees to … In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the … and applications. This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi … which could inform how scientists can more easily convert plants into carbon-neutral biofuels . What’s more, many … clearly have unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … 2019, recalled Uri Neri of Tel Aviv University, one of the project co-leads and first author of the study. Members of …
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by … one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or … in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … Institute Rock Powered Life grant. RS is supported by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734. …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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