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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Open Frameworks Training the Next Generation of Scientists
… faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are both supported by the DOE Biological and … reference genomes, but unfortunately there are not many available to study. This is because most fungal clades have no …
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Help from Citrus’ Bitter, Hardier Cousin
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), played a critical role in … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Tanja Woyke
… of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct … provides direction, leadership and oversight for all of the JGI user programs, including the Community Science Program …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) through the JGI Community Science … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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A Model System for Perennial Grasses
… including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the … the candidate bioenergy crop, switchgrass. Through the JGI’s Community Science Program , JGI sequenced and … responses in P. hallii . The HAL2 and FIL2 genomes are available on the JGI’s plant portal Phytozome .   …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across multiple … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the  DOE …
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Understanding Wildfire Recovery, Starting in Soil
… and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) Joint … at Pacific Northwest National Laboratory and Lawrence Berkeley National Laboratory, respectively. The team’s …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory through the Community Science Program . The … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) …
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Fungal Friends or Foes in Plant Roots
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings were described in … 2125 programme. This research was also supported by the Laboratory of Excellence ARBRE (ANR- 11-LABX-0002-01), the …
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