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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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The Case for Conservation
Carey put it, these sex chromosomes first evolved when the Earth’s continents were still Pangea. McDaniel’s lab … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from moss sex chromosomes can be applied to improve …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all …
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research consortium led … evolution and could lead to advancements in improving plant resilience and productivity. The algal genomes sequences are …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI … worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop … a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation Process (WIP) …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple web-based form and are …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community … of the sequences. The variety of palindromes observed in nature — for example, in humans Y chromosomes and some …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Nayfach A, et al. 2021. A genomic catalogue of Earth’s microbiomes. Biotechnol . doi: … pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum …
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