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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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From Competition to Cooperation
… across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry … from the French National Institute for Agriculture, Food and Environment (INRAE), Hungary’s Biological Research … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests … University of Rhode Island, as a Senior Scientist at Warp Drive Bio, and as a bioinformatics HPC consultant with … Hopkins University (2000) BS in Chemistry, SUNY Albany (1996) … List available on Google Scholar … Education … …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the … at the University of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award for Exceptional …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those … novel enzymatic activities using phylogenomic driven approaches, and understanding the design principles …
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Doubling Down on Known Protein Families
… how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … function, but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … working at a lab for my career. And of course, I also met a ton of really cool people who do really cool science, and I …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … Padilla-Benavides T, Stübe R, Argüello JM and Merchant SS. (2014) Evolution of a plant- specific copper chaperone family …
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