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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Year in Review: JGI’s 2018 Progress Report Available Now
… of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), … cycle. Copies are available online – click here to go download one from the archive of JGI Progress Reports. Print …
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Learning to Look
… approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for … of bacterial viruses or phages called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary … This work received funding by the Alfred P. Sloan foundation …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year … us to highlight hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to …
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Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
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Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
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