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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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Olpidium, The Key to the Origin of Terrestrial Fungi
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues and …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … Functional Genomics call for proposals .  On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… exchanging ideas, forming collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 …
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How Maize Makes An Antibiotic Cocktail
… synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … help scientists produce more robust bioenergy plants in the future. … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data … genomes of the key community participants and enabling future metagenomics studies.   … The sequencing project was …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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The JGI Data Portal: Improving User Experience
… “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … more than 13 petabytes of data, accessible through the Genome Portal. “The task of making data more findable and … help us build a solid knowledge base that may inform future updates to one (or more) of the JGI Portals.” …
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iPHoP: A Matchmaker for Phages and their Hosts
… led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data … isolates and metagenomic datasets will strengthen future virus-host predictions. This information could open …
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Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons
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An Integrated Dataset to Understand Ecosystem Interaction
… were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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