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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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Fungus Fuels Tree Growth
… not well understood — scientists can better fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary To interrogate the close partnership of … Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… consequences on the entire food web, and therefore ecosystem services that we all depend on,” said Mock. Mock and … co-lead author of the study with Kara Martin. “But these ecosystems are literally melting away.” Driven by climate … communities,” said Mock. The greenhouse gas carbon dioxide (CO2), produced from the burning of fossil fuels, is what’s …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … microbes cycle nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  However, to get … Especially as machine learning and AI promise new ways of harnessing large datasets, JGI researchers and users are …
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Engineering a Synthetic Escherichia coli Coculture for Compartmentalized de novo Biosynthesis of Isobutyl Butyrate from Mixed Sugars
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W. Berkeley Kauffman
… of metagenomics, single-particle genomics, and metabolic engineering. …
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John Vogel
In addition to this fundamental work, he established an efficient switchgrass transformation pipeline and, in …
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Busting the Unbreakable Lignin
… the entire landscape of biomass production and bioproduct engineering. Summary That organisms make use of cellulose … presumed. After all, they’re able to produce enzymes highly efficient at making use of those other two components, which …
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Who We Are
… collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… 188 of which were shared with previous studies in the same system. With the right functional characterization, those … this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large will … This work focused on a relatively well-understood model system, so future directions will also include targeting …
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JGI at the AGU Fall Meeting
… a single research proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One … Data Standards and Reproducible Workflows To Advance Earth System Science” 11:18am Convention Center, Rm 238-239: Kaela …
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