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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … what might happen for a stressed typical plant, one that does what’s called C3 metabolism, named for a 3-carbon … along their edges. KAROLINA : My work with the JGI focuses on a group of plants called yuccas. If you know Joshua …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March …   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey …   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates
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Estimating DNA coverage and abundance in metagenomes using a gamma approximation
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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A Guide to Conquer the Biological Network Era Using Graph Theory
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Rapid whole-genome mutational profiling using next-generation sequencing technologies
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