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… also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and … easy to break down, as well as developing synthetic biology tools that can help produce value-added products from these …

… them to adapt to life on land. Learning that these genetic tools existed in close algal relatives  to terrestrial … discovered that ancient algae already possessed genetic tools to cope with environmental stresses such as drought … (grant agreement no. 101001675). … Zygnema on PhycoCosm … Dataset …

Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … number of users with a record output of products, making data easier to access and use, and by investing in the …

I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a …

… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … and his colleagues developed first worked on a reference dataset that included genome sequences known to be … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …

… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses viral genomes, and grades their quality …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. …

… so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine … fungal strains, that will generate a massive amount of data that current technology has never encountered in the …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care …

… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …