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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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IMG/M: the integrated metagenome data management and comparative analysis system
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data …
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Approved Proposals
… as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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The BioMart community portal: an innovative alternative to large, centralized data repositories
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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