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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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The integrated microbial genomes system: an expanding comparative analysis resource
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Natural Prodcast Episode 5: Brad Moore
… wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and … pretty exciting. But everyone was working with terrestrial systems. No one was, at that time, really working with … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Uncovering Novel Genomes from Earth’s Microbiomes
Berkeley National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …
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JGI Hosts GPU Hackathon in May
… is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … Officer Kjiersten Fagnan of the upcoming event. “The tools we use to process and analyze these data are diverse … sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any …
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