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The BioMart community portal: an innovative alternative to large, centralized data repositories

acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive

Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Examples: Successful LOIs & Submissions

… Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with …

DOE Metrics

… hours. FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational …

Simon Roux

… include the development of novel computational tools to identify virus sequences, the design of new … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …

Dispatches From JGI Interns

… describe their deep dives into genomics, computational tools, and big data. …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.