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… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …

… Being able to work with state of the art technology and greenhouses/grow chambers has been an incredible experience. … : “The best part of the internship is the welcome and open community of the JGI. Everyone is excited to learn and … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in … sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a total of 44,652 …

… a series of geographic coordinates which go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his …

… the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution … 2018-present Member, EcoFAB steering committee 2014-present …

… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … improve our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but they also … annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team led by researchers at the …

… habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues …

… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team compared two strains of …

… sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis … understand what genes exist across the species. Earlier pan-genomes for other plants, like the soybean relative Glycine …