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Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
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JGI User Executive Committee Expands
… he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary … non-R1 institutions, now defined as those that don’t spend $50 million in annual research and don’t award at least 70 …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . …
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing
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Making a Lichen Together
… to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could help inform efforts at …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years … from across the species range. With these high-quality reference genomes for P. hallii , researchers can identify …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: … Science Program, the JGI sequenced and characterized 270 genomes of the Clostridium genus for LanzaTech, information …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team led by researchers at the … it paves the way for dissection of additional traits, in fungi and beyond. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function … a subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
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