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A Guide to Conquer the Biological Network Era Using Graph Theory
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Modular cell-free expression plasmids to accelerate biological design in cells
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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Learning to Look
… are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What we’re … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival …
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JGI announces 2025 Functional Genomics awardees
… transcriptional network mapping, developing microbial systems to convert renewable feedstocks into advanced biofuels and chemicals, and harnessing … genomic data with predictive modeling and bioengineering to advance U.S. energy independence and biotechnology …
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
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Host-specific and tissue-dependent orchestration of microbiome community structure in traditional rice paddy ecosystems
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Multiple sources of aerobic methane production in aquatic ecosystems include bacterial photosynthesis
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Uncovering novel functions of the enigmatic, abundant, and active Anaerolineae in a salt marsh ecosystem.
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Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function
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Four Researchers Join JGI User Executive Committee
… the diverse research topics that the JGI supports that advance DOE Office of Science Biological and Environmental … community to study complex biological and environmental systems. The foundational studies enabled contribute to the … such as functional studies (e.g., a functional encyclopedia building on GEBA) and in microbiome engineering.  Köpke is …
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