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Effects of Polar Light Cycle on Microbial Food Web
… cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … The study was led by Rick Cavicchioli, professor at the University of New South Wales, Australia, and included … population spiked to 83%, only to dramatically fall to 1% in early spring and rebound by the late spring. …
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Pinning Down a Piece of Photosynthesis
… respiration and high-iron homeostasis,” said Nicolas Grosjean, the first author of this paper. Grosjean is a … across the Albert Einstein College of Medicine, Washington University in St. Louis and the University of California at … longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts …
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IMG Group
… mis-assignment of species names in genomes spanning nearly 18% of all existing species. Additionally, the complete …
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A Grass Model to Help Improve Giant Miscanthus
… across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …
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Expanding Virophage Diversity
… the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Roland Hatzenpichler is an associate professor at Montana University and associate director of its Thermal Biology …
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Marine Microbe Contains Multitudes
Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii … — then a postdoctoral associate in Ed DeLong’s group at the University of Hawaii at Manoa — and colleagues were able to …
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JGI@25: Strengthening Soybean
… of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published … After analyzing the original sequence, Gary Stacey of the University of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a …
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How Maize Makes An Antibiotic Cocktail
… zealexins. Even though scientists have identified at least 15 zealexins, they suspect there are even more to find. … of diverse structures. The Impact Zealexins belong to a class of chemicals called terpenoids, which have a structure … study’s senior author Alisa Huffaker, a biologist at the University of California, San Diego. The findings could help …
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Graduate Students Get Thesis Research Opportunity at the JGI
… were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects … SCGSR awardee, Ian Rambo from Brett Baker’s lab at the University of Texas-Austin. Rambo will be studying the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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How to Submit Sequencing Samples
… your Project Manager or [email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining … Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for … user. PLEASE NOTE: The JGI will not accept any materials classified above NIH Biosafety Level 2. 3) Review Shipping …
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