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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … transcriptomic technologies, as described in the JGI Strategic Plan. The present paper provides a foundational …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … for data quality and sharing, and data workflows and management best practices that have advanced the microbial …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan …
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Improving the Cacao Genome and Phytozome
… exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in … annotation was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional biology and breeding.     …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied … microorganisms. “We started this project under the JGI’s strategic thrust of inter-organismal interactions, because …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … out to more than 200 researchers around the world in accordance with the JGI data use policy. “I felt it is important … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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Examples: Successful LOIs & Submissions
… Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … insights in lignin biosynthetic pathway edited populus … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core …
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of Intent are due March 17, 2021 for … also welcome to apply to the FICUS program. Find out more about the FICUS program at:  jgi.doe.gov/user-programs . Q:  …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in … that’s an example of a yucca species. And the cool thing about yuccas is that there are closely related species that …
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