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Janey Lee
Janey provides support for custom single-cell user projects and projects within the group. …
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JGI announces 2024 Functional Genomics awardees
… the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic … Tapping into these functions allows researchers to use them for engineering applications in support of … that could ultimately enable new or more efficient biotechnologies.  Below find a list of the nine researchers …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … JGI on a proposal using this approach through the Emerging Technologies Opportunity Program (ETOP). Following that …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: … Merchant is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… down potential biomass sources in ways we are only just beginning to understand. A better understanding of rumen … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … is one such example.” Jones noted that he talks to growers about Cotton Inc.’s long-term investment in crop research. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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UC Merced Interns Reflect on Their JGI Summer Projects
… skills as well as build their network in the field of genomics and scientific research. The topics students worked … wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and …
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