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JGI Announces 2025 New Investigator Portfolio
… novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part … will investigate a diverse array of projects, including the genomic dynamics of biofuel-producing fungi, the effects of … November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a …
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An Integrated Dataset to Understand Ecosystem Interaction
… work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to … time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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DOE JGI Interns Share Their Summer Experiences
… of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two … groups, respectively. Each of the interns spoke briefly about their time at the JGI at …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science … genomics can add significant value to the other commonly used culture-independent sequencing approaches including … remain unknown. In recent years, advances in sequencing technologies and bioinformatic tools have helped decode the …
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When “The Blob” Made It Hotter Under the Water
… from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. … final dataset – available to the research community on an online interactive browser – contains the phenotypic records …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … from private industry. I really liked the fairly flat organizational structure, and found everyone to be welcoming …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, …
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David Goodstein
KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in …
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