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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . … of Science User Facility, through its  Community Science Program in order to get  M. elongata and  I. europaea  …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely …
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2024 Progress Report
… in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … realize our new vision to, “ Lead genomic innovation for a sustainable bioeconomy ” — as articulated in our new …
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Architecture, catalysis and regulation of methylthio-alkane reductase for bacterial sulfur acquisition from volatile organic compounds
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which … an approach, the team says, that could be applied to other eukaryotes. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … puts the spotlight on JGI’s DNA design and synthesis superpower. Through a series of case studies, JGI scientific …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a nucleus). These … other words, some like it hot; some do not. “We can think about the ocean, naively, as a sort of homogeneous medium. …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… researchers to submit white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July … exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a presentation that …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully … of Energy (DOE) Biological and Environmental Research (BER) program to advance a fundamental understanding of genome … megabases versus 120 MB in Chlamydomonas . With fewer redundant pathways and clearer gene-to-function relationships …
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JGI@25: The Little Alga That Could
… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational Scientist Simon … “This is important because the textbook dogma is that in eukaryotes, one protein is produced from one RNA,” Merchant …
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